Mar17 workshop day 3

8:30-9:00: Breakfast

9:00-9:15: Welcome back and intro

Multiple choice questions for recap of yesterday's topics (for self-evaluation):PDF

Slides: PDF

9:15-9:45: The Bacterial Analysis Pipeline and batch upload

Readings: Thomsen et al 2016 (Pipeline paper) PDF

Slides: PDF

9:45-11:00: Computer work (batch upload, pipeline)


11:00-11:15: Coffee

11:15-11:30: Wrap-up of computer work

Slides: PDF

11:30-12:00: CGE and The Global Microbial Identifier Initiative (Ole Lund, DTU)


12:00-13:00: Lunch

13:00-13:30: Metagenomics

Readings: Hasman et al 2014 (Urine metagenomics) PDF

Readings: Nordahl Pedersen et al 2015 (Airtoilet waste paper) PDF

Slides: PDF

13:30-14:00: Computer work - MGMapper


14:00-14:15: Wrap-up of computer work

Slides:  PDF

14:15-14:30: Coffee

14:30-15:15: Real world applications (Henrik Hasman, SSI)

Slides:  PDF

15:15-15:30: Evaluation and workshop ends

Please spend 5 minutes evaluating the workshop:  Evaluation

Please remember to pick up your course certificate before you leave.

The bus will pick you up at 15:30 and drive you to Rungsted St. and then Rungstedgård Hotel.

Thanks for now and have a safe trip home!