Results

This page contains links to all results from the exercise 1-6.

Exercise 1

KmerFinder

Kleb7    Kleb9    Kleb10    Unknown_draft_genome

ResFinder

Kleb7    Kleb9    Kleb10    Unknown_draft_genome

PlasmidFinder

Kleb7    Kleb9    Kleb10

KmerResistance

Kleb7    Kleb9    Kleb10

MLST

Kleb7    Kleb9    Kleb10    Unknown_draft_genome

Exercise 2

ResFinder

escherichia_coli_c227-11

SerotypeFinder

escherichia_coli_c227-11

VirulenceFinder

escherichia_coli_c227-11

MyDBFinder

escherichia_coli_c227-11

Ec4

Exercise 3

Kmerfinder

ERR070035-not-outbreak    ERR070041-not-outbreak    HW1    HW2    P11    P12    P15    P22    P24    P26

NDtree

All isolates

All isolates except the two outliers

CSIPhylogeny

All isolates

All isolates except the two outliers

Exercise 4

RUCS results

Exercise 5

You may login to CGE using an account specific for you. To see your username look at the list of participants. The password is 1234.

Exercise 6

MGMapper outbreak_matrix_pathogen.fastq results