8:30-9:00: Breakfast
9:00-9:15: Welcome back and intro
Slides: PDF
9:15-9:45: The Bacterial Analysis Pipeline and batch upload
Readings: Thomsen et al 2016 (Pipeline paper) PDF
Slides: PDF
9:45-10:00: Coffee
10:00-11:15: Computer work (batch upload, pipeline, map)
11:15-11:30: Wrap-up of computer work
Slides: PDF
11:30-12:30: Lunch
12:30-13:15: Metagenomics
Readings: The Human Microbiome Projects Consortium (The Human Microbiome Project) PDF
Readings: Hasman et al 2014 (Urine metagenomics) PDF
Readings: Wilson et al 2014 (Metagenomics in action at the clinic) PDF
Readings: Nordahl Pedersen et al 2015 (Airtoilet waste paper) PDF
Slides: PDF
13:15-13:45: Computer work - MGMapper
13:45-14:00: Coffee
14:00-14:45: Real world applications (Anette Hammerum, SSI)
Slides: PDF
14:45-15:00: Evaluation and workshop ends
Please spend 5 minutes evaluating the workshop: Link to SurveyMonkey