Workshop day 3

8:30-9:00: Breakfast

9:00-9:15: Welcome back and intro

Slides: PDF

9:15-9:45: The Bacterial Analysis Pipeline and batch upload

Readings: Thomsen et al 2016 (Pipeline paper) PDF

Slides: PDF

9:45-10:00: Coffee

10:00-11:15: Computer work (batch upload, pipeline, map)


11:15-11:30: Wrap-up of computer work

Slides: PDF

11:30-12:30: Lunch

12:30-13:15: Metagenomics

Readings: The Human Microbiome Projects Consortium (The Human Microbiome Project) PDF

Readings: Hasman et al 2014 (Urine metagenomics) PDF

Readings: Wilson et al 2014 (Metagenomics in action at the clinic) PDF

Readings: Nordahl Pedersen et al 2015 (Airtoilet waste paper) PDF

Slides: PDF

13:15-13:45: Computer work - MGMapper


13:45-14:00: Coffee

14:00-14:45: Real world applications (Anette Hammerum, SSI)

Slides: PDF

14:45-15:00: Evaluation and workshop ends

Please spend 5 minutes evaluating the workshop: Link to SurveyMonkey